Ibco LifeFigure 1. Hes1, Hath1 and KLF4 mRNA expression in LS174T 15900046 cells after get LY-2409021 treatment with different heat-inactivated bacteria for 3 hours. Hes1 expression was impaired by Symbioflor G3, E. coli K-12 and E. coli Nissle 1917 (A). Hath1 transcripts were downregulated by E. coli K-12 and E. coli Nissle 1917 (B). KLF4 mRNA was augmented by L. fermentum (C). Data represent the means 6 SEM normalised to basal expression of untreated controls set at 1 (n = 4). *: p,0.05, **: p,0.01, ***: p,0.001. For 12 hours treatment results see Fig. S1. doi:10.1371/journal.pone.0055620.gBacteria Regulate Intestinal DifferentiationFigure 2. Hes1, Hath1 and KLF4 protein expression (Western blot) in LS174T cells after treatment with heat-inactivated E. coli Nissle 1917. Hes1 Western blot analysis showed a double band after incubation (A). The protein content of the lower band (equivalent to the control band) was significantly decreased in comparison to controls after 12 hours of treatment (A). Hath1 protein was significantly decreased after 6 hours treatment with E. coli Nissle 1917 (B). KLF4 was clearly downregulated after 24 hours of treatment (C). Data represent the means 6 SEM normalised to basal expression of untreated controls set at 1 (n = 3). *: p,0.05. doi:10.1371/journal.pone.0055620.gTechnologies) and incubated in FCS- and antibiotic-free DMEM for 12 hours. To investigate the possible role of several bacteria in the regulation of epithelial differentiation, LS174T cells were treated with heat-inactivated E. coli strains Symbioflor G1, G2 and G3, Escherichia coli K-12, E. coli Nissle 1917, HIF-2��-IN-1 Lactobacillus fermentum and acidophilus, Bifidobacterium longum, breve and adolescentis as well as Bacteroides vulgatus for 3 and 12 hours. LS174T cells were also incubated for 3 hours with E. coli Nissle 1917 wild type and E. coli Nissle 1917 mutant strains EcNDfliA, EcNDfliC, EcNDflgE, EcNDfim, EcNDfoc and EcNDcsgBA, which were kindly provided by T. Oelschlaeger (Institute for Molecular Biology of Infection, University of Wurzburg, Germany). The characteristics of the used ?bacterial strains are summarized in table 1. All E. coli strains and B. vulgatus were grown under aerobic, Lactobacilli and Bifidobacteria under anaerobic conditions as described previously [30]. For experiments, bacteria were heat-inactivated in a water bath at 65uC for 1 hour, washed with PBS and adjusted to a density of 36108 cells/ml with FCS- and antibiotic-free DMEM. The possible involvement of Notch signalling was investigated by the treatment of LS174T cells with the c-secretase (Notch) inhibitor dibenzazepine (DBZ, Axon Medchem, Groningen, Netherlands) in a concentration of 1 mM (in 0.1 DMSO in DMEM) for 3, 6, 12 and 24 hours in absence or presence of E. coli Nissle 1917. After incubation, LS174T cells were rinsed in PBS and mRNA (for PCR measurements) or total protein (for Western blot experiments) was isolated as described below. All cell culture experiments were performed for at least 3 independent times in triplicates.M. Pasparakis (Institute for Genetics, Centre for Molecular Medicine University of Cologne). All animal procedures were conducted in accordance with European, national and institutional guidelines and protocols and were approved at 06.08.2008 from the ethics committee of Tubingen (Regierungsprasidium AZ 35/9185.81-3), Research-Nr. ??929.RNA Isolation and Reverse TranscriptionTreated LS174T cells were washed with PBS and harvested by scraping. Total RNA from the ce.Ibco LifeFigure 1. Hes1, Hath1 and KLF4 mRNA expression in LS174T 15900046 cells after treatment with different heat-inactivated bacteria for 3 hours. Hes1 expression was impaired by Symbioflor G3, E. coli K-12 and E. coli Nissle 1917 (A). Hath1 transcripts were downregulated by E. coli K-12 and E. coli Nissle 1917 (B). KLF4 mRNA was augmented by L. fermentum (C). Data represent the means 6 SEM normalised to basal expression of untreated controls set at 1 (n = 4). *: p,0.05, **: p,0.01, ***: p,0.001. For 12 hours treatment results see Fig. S1. doi:10.1371/journal.pone.0055620.gBacteria Regulate Intestinal DifferentiationFigure 2. Hes1, Hath1 and KLF4 protein expression (Western blot) in LS174T cells after treatment with heat-inactivated E. coli Nissle 1917. Hes1 Western blot analysis showed a double band after incubation (A). The protein content of the lower band (equivalent to the control band) was significantly decreased in comparison to controls after 12 hours of treatment (A). Hath1 protein was significantly decreased after 6 hours treatment with E. coli Nissle 1917 (B). KLF4 was clearly downregulated after 24 hours of treatment (C). Data represent the means 6 SEM normalised to basal expression of untreated controls set at 1 (n = 3). *: p,0.05. doi:10.1371/journal.pone.0055620.gTechnologies) and incubated in FCS- and antibiotic-free DMEM for 12 hours. To investigate the possible role of several bacteria in the regulation of epithelial differentiation, LS174T cells were treated with heat-inactivated E. coli strains Symbioflor G1, G2 and G3, Escherichia coli K-12, E. coli Nissle 1917, Lactobacillus fermentum and acidophilus, Bifidobacterium longum, breve and adolescentis as well as Bacteroides vulgatus for 3 and 12 hours. LS174T cells were also incubated for 3 hours with E. coli Nissle 1917 wild type and E. coli Nissle 1917 mutant strains EcNDfliA, EcNDfliC, EcNDflgE, EcNDfim, EcNDfoc and EcNDcsgBA, which were kindly provided by T. Oelschlaeger (Institute for Molecular Biology of Infection, University of Wurzburg, Germany). The characteristics of the used ?bacterial strains are summarized in table 1. All E. coli strains and B. vulgatus were grown under aerobic, Lactobacilli and Bifidobacteria under anaerobic conditions as described previously [30]. For experiments, bacteria were heat-inactivated in a water bath at 65uC for 1 hour, washed with PBS and adjusted to a density of 36108 cells/ml with FCS- and antibiotic-free DMEM. The possible involvement of Notch signalling was investigated by the treatment of LS174T cells with the c-secretase (Notch) inhibitor dibenzazepine (DBZ, Axon Medchem, Groningen, Netherlands) in a concentration of 1 mM (in 0.1 DMSO in DMEM) for 3, 6, 12 and 24 hours in absence or presence of E. coli Nissle 1917. After incubation, LS174T cells were rinsed in PBS and mRNA (for PCR measurements) or total protein (for Western blot experiments) was isolated as described below. All cell culture experiments were performed for at least 3 independent times in triplicates.M. Pasparakis (Institute for Genetics, Centre for Molecular Medicine University of Cologne). All animal procedures were conducted in accordance with European, national and institutional guidelines and protocols and were approved at 06.08.2008 from the ethics committee of Tubingen (Regierungsprasidium AZ 35/9185.81-3), Research-Nr. ??929.RNA Isolation and Reverse TranscriptionTreated LS174T cells were washed with PBS and harvested by scraping. Total RNA from the ce.
