T 67 dpi by a recovery phenotype related using a high quantity of repressed transcripts, hence building an unfavourable cellular atmosphere to support SACMV infection. Despite the fact that cassava MMP-3 Inhibitor supplier resistance genes CMD1 and CMD2 have been positioned on linkage maps of cassava, these genes haven’t yet been identified and mapped to any scaffolds of version 4.1 with the cassava draft genome presently available by way of phytozome, and therefore the possible function of these two genes in CMD resistance remains to be elucidated. In summary, the exceptional lack of R gene response in the tolerant TME3 landrace at 12 dpi, in comparison with the extremely susceptible T200 whereAllie et al. BMC Genomics 2014, 15:1006 biomedcentral/1471-2164/15/Page 14 ofTable 2 Chosen differentially expressed (log2-fold) genes in T200 and TME3 made use of for additional discussion within this paperGene Cassava accession Arabidopsis AGI accession 12 dpi Log2 fold T200 – Class I resistance genes Illness resistance protein (TIR-NBS-LRR class) family members Illness resistance protein (TIR-NBS-LRR class) loved ones Disease resistance protein (TIR-NBS-LRR class) Illness resistance protein (TIR-NBS-LRR class) loved ones Illness resistance protein (TIR-NBS-LRR class) household Illness resistance protein (TIR-NBS-LRR class), putative Illness resistance protein (TIR-NBS-LRR class) family members Illness resistance protein (TIR-NBS-LRR class) Disease resistance protein (TIR-NBS-LRR class), putative Disease resistance protein (TIR-NBS-LRR class) household Illness resistance protein (TIR-NBS-LRR class) family cassava4.1_009831m.g cassava4.1_025981m.g cassava4.1_006736m.g cassava4.1_000944m.g cassava4.1_000534m.g cassava4.1_000331m.g cassava4.1_001210m.g cassava4.1_007699m.g cassava4.1_031642m.g cassava4.1_032672m.g cassava4.1_017691m.g AT5G18350.1 AT4G16960.1 AT1G69550.1 AT4G12010.1 AT5G36930.two AT5G17680.1 AT3G44480.1 AT1G69550.1 AT5G17680.1 AT4G12010.1 AT3G04220.1 -1.98336 -1.93152 -2.74964 -3.93415 -2.40348 -2.04993 -1.80402 -3.89602 -3.68973 -2.75917 -2.28131 -3.96304 four.62E-04 2.18E-06 1.58E-03 1.14E-02 1.48E-02 2.04E-05 eight.52E-06 eight.32E-04 3.04E-03 1.78E-06 -3.16827 -4.51391 -3.38156 -2.16756 -2.20612 -3.88410 -3.83451 -3.88542 -3.47964 -4.09620 1.44E-04 2.55E-07 three.74E-05 1.24E-02 4.30E-03 2.74E-05 five.23E-06 1.83E-05 2.50E-05 three.13E-06 p-value 32 dpi Log2 fold p-value 67 dpi Log2 fold p-valueTME3 – Class I Resistance Genes Disease resistance protein (TIR-NBS-LRR class), putative Illness resistance protein (TIR-NBS-LRR class) family T200 – Histone-related genes Histone H4 Histone H2A eight Histone superfamily protein Histone superfamily protein Histone superfamily protein Histone H2A ten Histone superfamily protein Histone superfamily protein Histone H2A 7 Histone H2A 7 Histone H4 Histone superfamily protein Histone H4 Histone H4 TME3 – Histone-related genes Histone acetyltransferase with the MYST family cassava4.1_029570m.g AT5G64610.1 -3.17558 0.03731 cassava4.1_029975m.g cassava4.1_018866m.g cassava4.1_019888m.g cassava4.1_018611m.g cassava4.1_028744m.g cassava4.1_026667m.g cassava4.1_030637m.g cassava4.1_024615m.g cassava4.1_018569m.g cassava4.1_018568m.g cassava4.1_019914m.g cassava4.1_018874m.g cassava4.1_019911m.g cassava4.1_019891m.g AT2G28740.1 AT2G38810.two AT1G07820.1 AT1G08880.1 AT3G27360.1 μ Opioid Receptor/MOR Antagonist Biological Activity AT1G51060.1 AT3G27360.1 AT3G27360.1 AT5G27670.1 AT5G27670.1 AT2G28740.1 AT3G27360.1 AT2G28740.1 AT2G28740.1 2.92352 two.28609 1.74066 ?0.03976 0.04821 0.04304 1.74066 3.68140 2.48875 2.03029 2.33165 1.92352 1.86E-02 five.09E-03 5.18E-03 9.65E-03 1.04E-02 4.
